GMAP-GSNAP database (human genome)

Use the following example to map one or more cDNAs sequences in a FASTA file to the human genome assembly GRCh38.p14:

gmap -D /datasets/bio/gmap-gsnap/2025-01-02/db -d GCF_000001405.40_GRCh38.p14 <cdna_file>

Path:	`/datasets/bio/gmap-gsnap`
URL:	https://github.com/juliangehring/GMAP-GSNAP
Downloaded:	2025-01-02
Cite:	Wu TD, Reeder J, Lawrence M, Becker G, Brauer MJ. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality. Methods Mol Biol. 2016;1418:283-334. doi:10.1007/978-1-4939-3578-9_15
Variant:
Bibtex:	`@inbook{Wu2016,title = {GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality},ISBN = {9781493935789},ISSN = {1940-6029},url = {http://dx.doi.org/10.1007/978-1-4939-3578-9_15},DOI = {10.1007/978-1-4939-3578-9_15},booktitle = {Statistical Genomics},publisher = {Springer New York},author = {Wu, Thomas D. and Reeder, Jens and Lawrence, Michael and Becker, Gabe and Brauer, Matthew J.},year = {2016},pages = {283–334}}`